Crush of the app Opening a xdmf file

ranslated Report (Full Report Below)
-------------------------------------

Process:               paraview [26479]
Path:                  /Applications/ParaView-5.9.0.app/Contents/MacOS/paraview
Identifier:            org.paraview.ParaView
Version:               5.9.0 ()
Code Type:             X86-64 (Native)
Parent Process:        launchd [1]
User ID:               501

Date/Time:             2023-11-27 14:47:21.7603 +0100
OS Version:            macOS 12.6 (21G115)
Report Version:        12
Anonymous UUID:        6DBD6F1F-D519-3C15-8A02-F8F2BEB105E6

Sleep/Wake UUID:       51D9DE9E-6035-4E86-966A-FE61DC4A9893

Time Awake Since Boot: 190000 seconds
Time Since Wake:       272 seconds

System Integrity Protection: enabled

Crashed Thread:        0  paraview  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_CRASH (SIGABRT)
Exception Codes:       0x0000000000000000, 0x0000000000000000
Exception Note:        EXC_CORPSE_NOTIFY

Application Specific Information:
abort() called


Thread 0 Crashed:: paraview Dispatch queue: com.apple.main-thread
0   libsystem_kernel.dylib        	    0x7ff819b0600e __pthread_kill + 10
1   libsystem_pthread.dylib       	    0x7ff819b3c1ff pthread_kill + 263
2   libsystem_c.dylib             	    0x7ff819a87d24 abort + 123
3   libc++abi.dylib               	    0x7ff819af8082 abort_message + 241
4   libc++abi.dylib               	    0x7ff819ae91a5 demangling_terminate_handler() + 242
5   libobjc.A.dylib               	    0x7ff8199e5e19 _objc_terminate() + 104
6   libc++abi.dylib               	    0x7ff819af74a7 std::__terminate(void (*)()) + 8
7   libc++abi.dylib               	    0x7ff819af9eeb __cxa_rethrow + 99
8   libobjc.A.dylib               	    0x7ff8199efd6c objc_exception_rethrow + 37
9   AppKit                        	    0x7ff81c62bd62 -[NSApplication run] + 659
10  libqcocoa.dylib               	       0x11ea5464f QCocoaEventDispatcher::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 2495
11  QtCore                        	       0x10b1438ef QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 431
12  QtCore                        	       0x10b147e62 QCoreApplication::exec() + 130
13  paraview                      	       0x108409fb1 main + 497
14  dyld                          	       0x10f8d052e start + 462

Thread 1:
0   libsystem_pthread.dylib       	    0x7ff819b37f48 start_wqthread + 0

Thread 2:
0   libsystem_kernel.dylib        	    0x7ff819aff9b6 semaphore_wait_trap + 10
1   libtbb.dylib                  	       0x10b623c8f tbb::internal::rml::private_worker::thread_routine(void*) + 447
2   libsystem_pthread.dylib       	    0x7ff819b3c4e1 _pthread_start + 125
3   libsystem_pthread.dylib       	    0x7ff819b37f6b thread_start + 15

Thread 3:
0   libsystem_kernel.dylib        	    0x7ff819aff9b6 semaphore_wait_trap + 10
1   libtbb.dylib                  	       0x10b623c8f tbb::internal::rml::private_worker::thread_routine(void*) + 447
2   libsystem_pthread.dylib       	    0x7ff819b3c4e1 _pthread_start + 125
3   libsystem_pthread.dylib       	    0x7ff819b37f6b thread_start + 15

Thread 4:
0   libsystem_kernel.dylib        	    0x7ff819aff9b6 semaphore_wait_trap + 10
1   libtbb.dylib                  	       0x10b623c8f tbb::internal::rml::private_worker::thread_routine(void*) + 447
2   libsystem_pthread.dylib       	    0x7ff819b3c4e1 _pthread_start + 125
3   libsystem_pthread.dylib       	    0x7ff819b37f6b thread_start + 15

Thread 5:: com.apple.NSEventThread
0   libsystem_kernel.dylib        	    0x7ff819aff97a mach_msg_trap + 10
1   libsystem_kernel.dylib        	    0x7ff819affce8 mach_msg + 56
2   CoreFoundation                	    0x7ff819c0336d __CFRunLoopServiceMachPort + 319
3   CoreFoundation                	    0x7ff819c019f8 __CFRunLoopRun + 1276
4   CoreFoundation                	    0x7ff819c00e3c CFRunLoopRunSpecific + 562
5   AppKit                        	    0x7ff81c7a89ce _NSEventThread + 132
6   libsystem_pthread.dylib       	    0x7ff819b3c4e1 _pthread_start + 125
7   libsystem_pthread.dylib       	    0x7ff819b37f6b thread_start + 15

Thread 6:
0   libsystem_pthread.dylib       	    0x7ff819b37f48 start_wqthread + 0

Thread 7:
0   libsystem_pthread.dylib       	    0x7ff819b37f48 start_wqthread + 0

Thread 8:
0   libsystem_pthread.dylib       	    0x7ff819b37f48 start_wqthread + 0

Thread 9:
0   libsystem_pthread.dylib       	    0x7ff819b37f48 start_wqthread + 0


Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x000000010f94b600  rcx: 0x00007ff7b7b07148  rdx: 0x0000000000000000
  rdi: 0x0000000000000103  rsi: 0x0000000000000006  rbp: 0x00007ff7b7b07170  rsp: 0x00007ff7b7b07148
   r8: 0x00007ff7b7b07010   r9: 0x00007ff819afaf78  r10: 0x0000000000000000  r11: 0x0000000000000246
  r12: 0x0000000000000103  r13: 0x0000003000000008  r14: 0x0000000000000006  r15: 0x0000000000000016
  rip: 0x00007ff819b0600e  rfl: 0x0000000000000246  cr2: 0x000000010d737540
  
Logical CPU:     0
Error Code:      0x020000b8 
Trap Number:     133


Binary Images:
    0x7ff819afe000 -     0x7ff819b35fff libsystem_kernel.dylib (*) <8cc28466-fd2f-3c80-9834-9525b7beac19> /usr/lib/system/libsystem_kernel.dylib
    0x7ff819b36000 -     0x7ff819b41fff libsystem_pthread.dylib (*) <b5454e27-e8c7-3fdb-b77f-714f1e82e70b> /usr/lib/system/libsystem_pthread.dylib
    0x7ff819a06000 -     0x7ff819a8efff libsystem_c.dylib (*) <e42e9d7a-03b4-340b-b61e-dcd45fd4acc0> /usr/lib/system/libsystem_c.dylib
    0x7ff819ae8000 -     0x7ff819afdfff libc++abi.dylib (*) <7b800bb6-32e7-3597-b292-2c4da4c377b1> /usr/lib/libc++abi.dylib
    0x7ff8199c9000 -     0x7ff819a02fff libobjc.A.dylib (*) <4d9b0dca-7151-3875-b98e-b255db8267a8> /usr/lib/libobjc.A.dylib
    0x7ff81c5fc000 -     0x7ff81d48bfff com.apple.AppKit (6.9) <06015263-62ac-3b08-a298-dc835c18452a> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
       0x11ea1b000 -        0x11eb89fff libqcocoa.dylib (*) <3a44e819-d224-3f80-8f4c-914ce9dac077> /Applications/ParaView-5.9.0.app/Contents/Plugins/platforms/libqcocoa.dylib
       0x10af4f000 -        0x10b4befff org.qt-project.QtCore (5.15) <a65b58ae-d97c-3e82-92e9-4036029fed48> /Applications/ParaView-5.9.0.app/Contents/Frameworks/QtCore.framework/Versions/5/QtCore
       0x1083f8000 -        0x1084cdfff org.paraview.ParaView (5.9.0) <9251419b-c4f0-3754-be5b-d26df535874c> /Applications/ParaView-5.9.0.app/Contents/MacOS/paraview
       0x10f8cb000 -        0x10f936fff dyld (*) <71febccd-d9dc-3599-9971-2b3407c588a8> /usr/lib/dyld
       0x10b610000 -        0x10b65afff libtbb.dylib (*) <9a376a65-c9c2-39f4-abeb-a78be668c4e3> /Applications/ParaView-5.9.0.app/Contents/Libraries/libtbb.dylib
    0x7ff819b83000 -     0x7ff81a085fff com.apple.CoreFoundation (6.9) <93c48919-68af-367e-9a67-db4159bc962c> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation

External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=1.3G resident=0K(0%) swapped_out_or_unallocated=1.3G(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)

                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework               512K        4 
Activity Tracing                   256K        1 
CG backing stores                 2160K        4 
CG image                           296K       22 
ColorSync                          232K       28 
CoreAnimation                      712K       18 
CoreGraphics                        12K        2 
CoreImage                           12K        3 
CoreServices                       196K        1 
CoreUI image data                 3700K       30 
Foundation                          16K        1 
Kernel Alloc Once                    8K        1 
MALLOC                           633.1M      216 
MALLOC guard page                   32K        8 
MALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)
ObjC additional data                15K        1 
OpenGL GLSL                        256K        3 
STACK GUARD                       56.0M       10 
Stack                             23.1M       10 
VM_ALLOCATE                       6788K       50 
VM_ALLOCATE (reserved)           128.0M        1         reserved VM address space (unallocated)
__CTF                               756        1 
__DATA                            73.2M      676 
__DATA_CONST                      19.0M      222 
__DATA_DIRTY                       862K      125 
__FONT_DATA                          4K        1 
__GLSLBUILTINS                    5176K        1 
__LINKEDIT                       795.2M      281 
__TEXT                           578.5M      650 
__UNICODE                          592K        1 
dyld private memory               1280K        3 
mapped file                      456.1M       51 
shared memory                      772K       17 
===========                     =======  ======= 
TOTAL                              3.0G     2444 
TOTAL, minus reserved VM space     2.6G     2444 



-----------
Full Report
-----------

{"app_name":"paraview","timestamp":"2023-11-27 14:47:42.00 +0100","app_version":"5.9.0","slice_uuid":"9251419b-c4f0-3754-be5b-d26df535874c","build_version":"","platform":1,"bundleID":"org.paraview.ParaView","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6 (21G115)","incident_id":"460A76A6-D03F-4DDA-A9AD-A0FEFF60DA62","name":"paraview"}
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  "vmSummary" : "ReadOnly portion of Libraries: Total=1.3G resident=0K(0%) swapped_out_or_unallocated=1.3G(100%)\nWritable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               512K        4 \nActivity Tracing                   256K        1 \nCG backing stores                 2160K        4 \nCG image                           296K       22 \nColorSync                          232K       28 \nCoreAnimation                      712K       18 \nCoreGraphics                        12K        2 \nCoreImage                           12K        3 \nCoreServices                       196K        1 \nCoreUI image data                 3700K       30 \nFoundation                          16K        1 \nKernel Alloc Once                    8K        1 \nMALLOC                           633.1M      216 \nMALLOC guard page                   32K        8 \nMALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)\nObjC additional data                15K        1 \nOpenGL GLSL                        256K        3 \nSTACK GUARD                       56.0M       10 \nStack                             23.1M       10 \nVM_ALLOCATE                       6788K       50 \nVM_ALLOCATE (reserved)           128.0M        1         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            73.2M      676 \n__DATA_CONST                      19.0M      222 \n__DATA_DIRTY                       862K      125 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       795.2M      281 \n__TEXT                           578.5M      650 \n__UNICODE                          592K        1 \ndyld private memory               1280K        3 \nmapped file                      456.1M       51 \nshared memory                      772K       17 \n===========                     =======  ======= \nTOTAL                              3.0G     2444 \nTOTAL, minus reserved VM space     2.6G     2444 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "paraview",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "61af99aeda72d16a4beb7756",
      "factorPackIds" : {
        "SIRI_DIALOG_ASSETS" : "629fe54ebc762c0b6f758b6b"
      },
      "deploymentId" : 240000409
    },
    {
      "rolloutId" : "60356660bbe37970735c5624",
      "factorPackIds" : {

      },
      "deploymentId" : 240000027
    }
  ],
  "experiments" : [

  ]
}
}

Model: MacBookPro14,1, BootROM 451.140.1.0.0, 2 processors, Dual-Core Intel Core i5, 2,3 GHz, 8 GB, SMC 2.43f11
Graphics: Intel Iris Plus Graphics 640, Intel Iris Plus Graphics 640, Built-In
Display: Color LCD, 2560 x 1600 Retina, Main, MirrorOff, Online
Memory Module: BANK 0/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C3531324D3332443250462D3039
Memory Module: BANK 1/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C3531324D3332443250462D3039
AirPort: spairport_wireless_card_type_wifi (0x14E4, 0x170), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1710.4)
AirPort: 
Bluetooth: Version (null), 0 services, 0 devices, 0 incoming serial ports
Network Service: Wi-Fi, AirPort, en0
USB Device: USB30Bus
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.5

can somebody help me? The same issues present if using the latest version.

Please share the xdmf file

P2_eikonal.xdmf (973 Bytes)

Thank you so much for your response. It’s like frozen in a plain blue image without providing the 3d structure,

You need to share the .h5 files too.

I’ve tried so many times, but it says that there was an error occuring while uploading…

When I open it with the XdmfReader, it fails with:

 0: NVIDIA GeForce RTX 2080 Ti (Total: 11.5 GB, Available: 10.8 GB)
HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0:
  #000: /builds/gitlab-kitware-sciviz-ci/build/superbuild/hdf5/src/src/H5F.c line 620 in H5Fopen(): unable to open file
    major: File accessibility
    minor: Unable to open file
  #001: /builds/gitlab-kitware-sciviz-ci/build/superbuild/hdf5/src/src/H5VLcallback.c line 3502 in H5VL_file_open(): failed to iterate over available VOL connector plugins
    major: Virtual Object Layer
    minor: Iteration failed

Looks like your file is invalid.

ok. Thank you so much.