Loguru caught a signal: SIGSEGV

ParaView Support
1

Hey all,

I’m running Paraview version 5.10.1 on Ubuntu and I’m trying to compile a Python script that crashes at the command line trying to compile paraview.simple.TableToPoints with:

Loguru caught a signal: SIGSEGV
Stack trace:
38            0x401f7f /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/pvpython-real() [0x401f7f]
37      0x7fe1e9cdee40 __libc_start_main + 128
36      0x7fe1e9cded90 /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7fe1e9cded90]
35            0x4027be /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/pvpython-real() [0x4027be]
34      0x7fe1e6e08db4 vtkPythonInterpreter::PyMain(int, char**) + 532
33      0x7fe1e2e2e053 Py_Main + 67
32      0x7fe1e2e2dbf0 Py_RunMain + 1936
31      0x7fe1e2e09948 PyRun_SimpleFileExFlags + 376
30      0x7fe1e2e07a25 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x207a25) [0x7fe1e2e07a25]
29      0x7fe1e2dc331b PyEval_EvalCode + 27
28      0x7fe1e2dc32ee PyEval_EvalCodeEx + 62
27      0x7fe1e2dc32a2 _PyEval_EvalCodeWithName + 82
26      0x7fe1e2dc2f09 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x1c2f09) [0x7fe1e2dc2f09]
25      0x7fe1e2c6ddcb _PyEval_EvalFrameDefault + 22283
24      0x7fe1e2c67187 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x67187) [0x7fe1e2c67187]
23      0x7fe1e2c6dd2d _PyEval_EvalFrameDefault + 22125
22      0x7fe1e2cbd2d1 _PyFunction_Vectorcall + 177
21      0x7fe1e2dc2f09 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x1c2f09) [0x7fe1e2dc2f09]
20      0x7fe1e2c6e750 _PyEval_EvalFrameDefault + 24720
19      0x7fe1e2c682a7 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x682a7) [0x7fe1e2c682a7]
18      0x7fe1e2cc0be3 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0xc0be3) [0x7fe1e2cc0be3]
17      0x7fe1e2c67187 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x67187) [0x7fe1e2c67187]
16      0x7fe1e2c6e750 _PyEval_EvalFrameDefault + 24720
15      0x7fe1e2c682a7 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x682a7) [0x7fe1e2c682a7]
14      0x7fe1e2cc0be3 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0xc0be3) [0x7fe1e2cc0be3]
13      0x7fe1e2c67187 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x67187) [0x7fe1e2c67187]
12      0x7fe1e2c6e750 _PyEval_EvalFrameDefault + 24720
11      0x7fe1e2c6830b /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x6830b) [0x7fe1e2c6830b]
10      0x7fe1e2cbd4ee _PyObject_MakeTpCall + 158
9       0x7fe1e2d1850b /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x11850b) [0x7fe1e2d1850b]
8       0x7fe1954b15a1 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/lib/python3.9/site-packages/paraview/modules/vtkRemotingServerManager.so(+0xb15a1) [0x7fe1954b15a1]
7       0x7fe1e7d4a84b vtkSMInputProperty::AddInputConnection(vtkSMProxy*, unsigned int) + 427
6       0x7fe1e25b68f9 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libvtkCommonCore-pv5.10.so.1(+0x5b68f9) [0x7fe1e25b68f9]
5       0x7fe1e7d8ce2b vtkObject::vtkClassMemberCallback<vtkSMProperty>::operator()(vtkObject*, unsigned long, void*) + 59
4       0x7fe1e7d87323 vtkSMProperty::UpdateDomains() + 67
3       0x7fe1e7d08369 vtkSMArrayListDomain::Update(vtkSMProperty*) + 217
2       0x7fe1e7d0791d /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libvtkRemotingServerManager-pv5.10.so.1(+0x10791d) [0x7fe1e7d0791d]
1       0x7fe1e9e5297d /lib/x86_64-linux-gnu/libc.so.6(+0x19d97d) [0x7fe1e9e5297d]
0       0x7fe1e9cf7520 /lib/x86_64-linux-gnu/libc.so.6(+0x42520) [0x7fe1e9cf7520]
(   1.877s) [paraview        ]                       :0     FATL| Signal: SIGSEGV
error: exception occurred: Segmentation fault

Process finished with exit code 1

In case I try to run the script directly from the Paraview GUI (mesa) I get

Loguru caught a signal: SIGSEGV
Stack trace:
59            0x40802a /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/paraview-real() [0x40802a]
58      0x7f466b2b5e40 __libc_start_main + 128
57      0x7f466b2b5d90 /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f466b2b5d90]
56            0x407c8a /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/paraview-real() [0x407c8a]
55      0x7f4667a84120 QCoreApplication::exec() + 128
54      0x7f4667a7b62a QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 298
53      0x7f460c25ee13 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/plugins/platforms/../../lib/libQt5XcbQpa.so.5(+0x5ee13) [0x7f460c25ee13]
52      0x7f46682ee0db QWindowSystemInterface::sendWindowSystemEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 187
51      0x7f4668312b35 QGuiApplicationPrivate::processWindowSystemEvent(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 261
50      0x7f46683118ad QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 1837
49      0x7f4667a7cdd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 280
48      0x7f466a363260 QApplication::notify(QObject*, QEvent*) + 704
47      0x7f466a35c18c QApplicationPrivate::notify_helper(QObject*, QEvent*) + 156
46      0x7f466a3b68fb /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libQt5Widgets.so.5(+0x1b68fb) [0x7f466a3b68fb]
45      0x7f466a3b3d86 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libQt5Widgets.so.5(+0x1b3d86) [0x7f466a3b3d86]
44      0x7f466a3627cc QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer<QWidget>&, bool, bool) + 460
43      0x7f4667a7cdd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 280
42      0x7f466a363dc8 QApplication::notify(QObject*, QEvent*) + 3624
41      0x7f466a35c18c QApplicationPrivate::notify_helper(QObject*, QEvent*) + 156
40      0x7f466a399c28 QWidget::event(QEvent*) + 424
39      0x7f466a43f945 QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 213
38      0x7f466a43f77a /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libQt5Widgets.so.5(+0x23f77a) [0x7f466a43f77a]
37      0x7f466a43e45a /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libQt5Widgets.so.5(+0x23e45a) [0x7f466a43e45a]
36      0x7f466a43e272 QAbstractButton::clicked(bool) + 50
35      0x7f4667aab1ea QMetaObject::activate(QObject*, int, int, void**) + 1850
34      0x7f466943468f pqPythonShell::runScript() + 1695
33      0x7f4669432a9a pqPythonShell::executeScript(QString const&) + 506
32      0x7f4664a0671e vtkPythonInteractiveInterpreter::RunStringWithConsoleLocals(char const*) + 46
31      0x7f465c808bcc PyRun_StringFlags + 332
30      0x7f465c7c331b PyEval_EvalCode + 27
29      0x7f465c7c32ee PyEval_EvalCodeEx + 62
28      0x7f465c7c32a2 _PyEval_EvalCodeWithName + 82
27      0x7f465c7c2f09 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x1c2f09) [0x7f465c7c2f09]
26      0x7f465c66e750 _PyEval_EvalFrameDefault + 24720
25      0x7f465c6682a7 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x682a7) [0x7f465c6682a7]
24      0x7f465c667187 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x67187) [0x7f465c667187]
23      0x7f465c66dd2d _PyEval_EvalFrameDefault + 22125
22      0x7f465c6bd2d1 _PyFunction_Vectorcall + 177
21      0x7f465c7c2f09 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x1c2f09) [0x7f465c7c2f09]
20      0x7f465c66e750 _PyEval_EvalFrameDefault + 24720
19      0x7f465c6682a7 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x682a7) [0x7f465c6682a7]
18      0x7f465c6c0be3 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0xc0be3) [0x7f465c6c0be3]
17      0x7f465c667187 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x67187) [0x7f465c667187]
16      0x7f465c66e750 _PyEval_EvalFrameDefault + 24720
15      0x7f465c6682a7 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x682a7) [0x7f465c6682a7]
14      0x7f465c6c0be3 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0xc0be3) [0x7f465c6c0be3]
13      0x7f465c667187 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x67187) [0x7f465c667187]
12      0x7f465c66e750 _PyEval_EvalFrameDefault + 24720
11      0x7f465c66830b /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x6830b) [0x7f465c66830b]
10      0x7f465c6bd4ee _PyObject_MakeTpCall + 158
9       0x7f465c71850b /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x11850b) [0x7f465c71850b]
8       0x7f45502b15a1 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/lib/python3.9/site-packages/paraview/modules/vtkRemotingServerManager.so(+0xb15a1) [0x7f45502b15a1]
7       0x7f466634a84b vtkSMInputProperty::AddInputConnection(vtkSMProxy*, unsigned int) + 427
6       0x7f465bfb68f9 /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libvtkCommonCore-pv5.10.so.1(+0x5b68f9) [0x7f465bfb68f9]
5       0x7f466638ce2b vtkObject::vtkClassMemberCallback<vtkSMProperty>::operator()(vtkObject*, unsigned long, void*) + 59
4       0x7f4666387323 vtkSMProperty::UpdateDomains() + 67
3       0x7f4666308369 vtkSMArrayListDomain::Update(vtkSMProperty*) + 217
2       0x7f466630791d /home/philipp/ParaView-5.10.1-MPI-Linux-Python3.9-x86_64/bin/../lib/libvtkRemotingServerManager-pv5.10.so.1(+0x10791d) [0x7f466630791d]
1       0x7f466b42997d /lib/x86_64-linux-gnu/libc.so.6(+0x19d97d) [0x7f466b42997d]
0       0x7f466b2ce520 /lib/x86_64-linux-gnu/libc.so.6(+0x42520) [0x7f466b2ce520]
( 163.489s) [paraview        ]                       :0     FATL| Signal: SIGSEGV

Can anyone help me?

2

Can you provide the Python script? It looks like it’s using some domain that isn’t supported in some way. While we shouldn’t crash, being able to reproduce locally would help a lot (as there’s a lot going on in that vtkSMArrayListDomain::Update function to figure it out by staring at it. If it’s got stuff you can’t share, trimming it down to just any domain stuff to start would help.

3

Thanks for your quick reply Ben. I have shortened the script to a minimal example. As soon as it attempts to execute the TableToPoints command in line 10 the script crashes with the above error message. I can also upload the whole script if necessary.
domaintest.tar.gz (3.5 KB)

4

Cc: @mwestphal

5

I dont see anything wrong in the script. Please share the OpenFOAM data your are using.

6

Sorry I was not allowed to share the data.
After I reinstalled paraview, python and pycharm and switched back to older versions, no more errors appear.