Hi all,
I recently started having issues with running paraview in WSL.
I tried reinstalling WSL, reinstalling paraview but I still have this segmentation error when running a script .
I would like to note that everything works fine in GitHub actions so it’s likely related to my machine.
Do you have any pointers to what the issue may be?
Loguru caught a signal: SIGSEGV
Stack trace:
42 0x401de9 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/pvpython-real() [0x401de9]
41 0x7f2fecd71e40 __libc_start_main + 128
40 0x7f2fecd71d90 /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f2fecd71d90]
39 0x402446 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/pvpython-real() [0x402446]
38 0x7f2fe9c0a3f4 vtkPythonInterpreter::PyMain(int, char**) + 916
37 0x7f2fe7838cf0 Py_RunMain + 1936
36 0x7f2fe7814a18 PyRun_SimpleFileExFlags + 376
35 0x7f2fe7812af5 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x212af5) [0x7f2fe7812af5]
34 0x7f2fe77cdf8b PyEval_EvalCode + 27
33 0x7f2fe77cdf5e PyEval_EvalCodeEx + 62
32 0x7f2fe77cdf12 _PyEval_EvalCodeWithName + 82
31 0x7f2fe77cdb79 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x1cdb79) [0x7f2fe77cdb79]
30 0x7f2fe766e1ad _PyEval_EvalFrameDefault + 22077
29 0x7f2fe76c5571 _PyFunction_Vectorcall + 177
28 0x7f2fe77cdb79 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x1cdb79) [0x7f2fe77cdb79]
27 0x7f2fe766ebd0 _PyEval_EvalFrameDefault + 24672
26 0x7f2fe7668757 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x68757) [0x7f2fe7668757]
25 0x7f2fe76c8e43 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0xc8e43) [0x7f2fe76c8e43]
24 0x7f2fe76c5571 _PyFunction_Vectorcall + 177
23 0x7f2fe77cdb79 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x1cdb79) [0x7f2fe77cdb79]
22 0x7f2fe766a869 _PyEval_EvalFrameDefault + 7417
21 0x7f2fe76c53ea _PyObject_Call + 90
20 0x7f2fe772033b /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/../lib/libpython3.9.so.1.0(+0x12033b) [0x7f2fe772033b]
19 0x7f2f6e5c7414 /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/lib/python3.9/site-packages/paraview/modules/vtkRemotingViews.so(+0x1c7414) [0x7f2f6e5c7414]
18 0x7f2fe18b033a vtkSMViewProxy::StillRender() + 330
17 0x7f2feaacdd35 vtkPVSessionBase::ExecuteStream(unsigned int, vtkClientServerStream const&, bool) + 53
16 0x7f2feaacf01b vtkPVSessionCore::ExecuteStream(unsigned int, vtkClientServerStream const&, bool) + 59
15 0x7f2feaacf1e2 vtkPVSessionCore::ExecuteStreamInternal(vtkClientServerStream const&, bool) + 242
14 0x7f2fe9811b0d vtkClientServerInterpreter::ProcessStream(vtkClientServerStream const&) + 29
13 0x7f2fe981186e vtkClientServerInterpreter::ProcessOneMessage(vtkClientServerStream const&, int) + 1294
12 0x7f2fe981113d vtkClientServerInterpreter::ProcessCommandInvoke(vtkClientServerStream const&, int) + 1229
11 0x7f2fe9810973 vtkClientServerInterpreter::CallCommandFunction(char const*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&) + 355
10 0x7f2feb7bee00 vtkPVRenderViewCommand(vtkClientServerInterpreter*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&, void*) + 8528
9 0x7f2fe17ecef1 vtkPVRenderView::StillRender() + 97
8 0x7f2fe17fa3fa vtkPVRenderView::Render(bool, bool) + 2250
7 0x7f2fc1d55e01 vtkOpenGLRenderWindow::Render() + 81
6 0x7f2fba75f425 vtkRenderWindow::Render() + 741
5 0x7f2fc1d52c29 vtkOpenGLRenderWindow::Start() + 297
4 0x7f2fc1d4d5fd vtkOpenGLRenderWindow::OpenGLInit() + 13
3 0x7f2fc1d5393d vtkOpenGLRenderWindow::OpenGLInitContext() + 61
2 0x7f2fc146ead6 vtkglew_glewInit + 630
1 0x7f2fc145847a /home/remidm/ParaView-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64/bin/../lib/../lib/libvtkglew-pv5.11.so.1(+0x5847a) [0x7f2fc145847a]
0 0x7f2fecd8a520 /lib/x86_64-linux-gnu/libc.so.6(+0x42520) [0x7f2fecd8a520]
( 1.474s) [paraview ] :0 FATL| Signal: SIGSEGV
error: exception occurred: Segmentation fault
EDIT:
Actually it is not not working in GitHub actions even though neither the script/the data/the paraview version have changed…
Update after a bit of investigation:
I have re-run a Github Actions workflow that was successful last week .
The same workflow is now failing .
The only difference I could find is the OS version:
Could it be that by any chance the Paraview-5.11.2-osmesa-MPI-Linux-Python3.9-x86_64 is not compatible with Ubuntu 22.04.4?
mwestphal
(Mathieu Westphal (Kitware))
February 22, 2024, 12:37pm
3
This looks like exactly this issue, https://gitlab.kitware.com/paraview/paraview/-/issues/22350
Could you confirm Adrien diagnostic regarding different libc versions ?
1 Like
Indeed it looks identical!. Although this issue was opened 3 months ago and I only started seeing this a few weeks ago on my machine and this week on the GitHub actions runners
mwestphal
(Mathieu Westphal (Kitware))
February 22, 2024, 12:58pm
6
ArchLinux is ahead of Ubuntu. Could you check the libc version in your cases ?
Oh my bad. Sorry I’m far from being a Paraview expert… How do I check the libc version?
I have a maybe similar issue locally where I tried installing paraview with the following
conda create -n paraview
conda activate paraview
conda install -c conda-forge paraview
When running
paraview
I get:
QStandardPaths: wrong permissions on runtime directory /run/user/1000/, 0755 instead of 0700
: CommandLine Error: Option 'simd-mode' registered more than once!
LLVM ERROR: inconsistency in registered CommandLine options
Loguru caught a signal: SIGABRT
Stack trace:
55 0x55ea6e03d92d paraview(+0x892d) [0x55ea6e03d92d]
54 0x7f5e51c5de40 __libc_start_main + 128
53 0x7f5e51c5dd90 /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f5e51c5dd90]
52 0x55ea6e03d633 paraview(+0x8633) [0x55ea6e03d633]
51 0x55ea6e043e99 paraview(+0xee99) [0x55ea6e043e99]
50 0x7f5e5140267a QWidgetPrivate::setVisible(bool) + 106
49 0x7f5e513f687b QWidget::create(unsigned long long, bool, bool) + 219
48 0x7f5e513f6255 QWidgetPrivate::create() + 581
47 0x7f5e50696081 QWindowPrivate::create(bool, unsigned long long) + 129
46 0x7f5e41341918 QXcbIntegration::createPlatformWindow(QWindow*) const + 216
45 0x7f5e41354105 QXcbWindow::create() + 4197
44 0x7f5e4032caec /home/remidm/miniconda3/envs/paraview/plugins/xcbglintegrations/libqxcb-glx-integration.so(+0xaaec) [0x7f5e4032caec]
43 0x7f5e403efadc /lib/x86_64-linux-gnu/libGLX_mesa.so.0(+0x32adc) [0x7f5e403efadc]
42 0x7f5e403f2fd0 /lib/x86_64-linux-gnu/libGLX_mesa.so.0(+0x35fd0) [0x7f5e403f2fd0]
41 0x7f5e403ed143 /lib/x86_64-linux-gnu/libGLX_mesa.so.0(+0x30143) [0x7f5e403ed143]
40 0x7f5dd1fe4266 /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so(+0xbf266) [0x7f5dd1fe4266]
39 0x7f5dd1fdaef0 /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so(+0xb5ef0) [0x7f5dd1fdaef0]
38 0x7f5dd26315e7 /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so(+0x70c5e7) [0x7f5dd26315e7]
37 0x7f5dd26316a6 /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so(+0x70c6a6) [0x7f5dd26316a6]
36 0x7f5dd1fda5f0 /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so(+0xb55f0) [0x7f5dd1fda5f0]
35 0x7f5dd2ad185a /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so(+0xbac85a) [0x7f5dd2ad185a]
34 0x7f5dd2ad15ac /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so(+0xbac5ac) [0x7f5dd2ad15ac]
33 0x7f5dd2ad29ef /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so(+0xbad9ef) [0x7f5dd2ad29ef]
32 0x7f5e38399963 /usr/lib/wsl/lib/libd3d12core.so(+0x318963) [0x7f5e38399963]
31 0x7f5e383e0e40 /usr/lib/wsl/lib/libd3d12core.so(+0x35fe40) [0x7f5e383e0e40]
30 0x7f5e383df489 /usr/lib/wsl/lib/libd3d12core.so(+0x35e489) [0x7f5e383df489]
29 0x7f5e383de880 /usr/lib/wsl/lib/libd3d12core.so(+0x35d880) [0x7f5e383de880]
28 0x7f5e383deb2c /usr/lib/wsl/lib/libd3d12core.so(+0x35db2c) [0x7f5e383deb2c]
27 0x7f5e384af6a8 /usr/lib/wsl/lib/libd3d12core.so(+0x42e6a8) [0x7f5e384af6a8]
26 0x7f5e384c3781 /usr/lib/wsl/lib/libd3d12core.so(+0x442781) [0x7f5e384c3781]
25 0x7f5e401e1342 OpenAdapter12 + 178
24 0x7f5e401e14ce /usr/lib/wsl/drivers/iigd_dch.inf_amd64_89d4d93fe5389cc3/libigd12umd64.so(+0x14ce) [0x7f5e401e14ce]
23 0x7f5e0010a1fd /usr/lib/wsl/drivers/iigd_dch.inf_amd64_89d4d93fe5389cc3/libigd12um64xel.so(+0x281fd) [0x7f5e0010a1fd]
22 0x7f5e0013d811 /usr/lib/wsl/drivers/iigd_dch.inf_amd64_89d4d93fe5389cc3/libigd12um64xel.so(+0x5b811) [0x7f5e0013d811]
21 0x7f5e001509d0 /usr/lib/wsl/drivers/iigd_dch.inf_amd64_89d4d93fe5389cc3/libigd12um64xel.so(+0x6e9d0) [0x7f5e001509d0]
20 0x7f5e51cc46c8 dlopen + 72
19 0x7f5e51cc412e /lib/x86_64-linux-gnu/libc.so.6(+0x9012e) [0x7f5e51cc412e]
18 0x7f5e51da8b63 _dl_catch_error + 51
17 0x7f5e51da8a98 _dl_catch_exception + 136
16 0x7f5e51cc463c /lib/x86_64-linux-gnu/libc.so.6(+0x9063c) [0x7f5e51cc463c]
15 0x7f5e51e7634e /lib64/ld-linux-x86-64.so.2(+0xe34e) [0x7f5e51e7634e]
14 0x7f5e51da8a98 _dl_catch_exception + 136
13 0x7f5e51e75ff6 /lib64/ld-linux-x86-64.so.2(+0xdff6) [0x7f5e51e75ff6]
12 0x7f5e51da8af5 _dl_catch_exception + 229
11 0x7f5e51e6e568 /lib64/ld-linux-x86-64.so.2(+0x6568) [0x7f5e51e6e568]
10 0x7f5e51e6e47e /lib64/ld-linux-x86-64.so.2(+0x647e) [0x7f5e51e6e47e]
9 0x7f5dc96be6a4 /usr/lib/wsl/drivers/iigd_dch.inf_amd64_89d4d93fe5389cc3/libigc.so(+0x2116a4) [0x7f5dc96be6a4]
8 0x7f5dc9cc3677 /usr/lib/wsl/drivers/iigd_dch.inf_amd64_89d4d93fe5389cc3/libigc.so(+0x816677) [0x7f5dc9cc3677]
7 0x7f5dc1256a2f llvm::cl::Option::addArgument() + 319
6 0x7f5dc12568e6 /usr/lib/wsl/drivers/iigd_dch.inf_amd64_89d4d93fe5389cc3/libLLVM-14.so(+0x83e8e6) [0x7f5dc12568e6]
5 0x7f5dc127803e /usr/lib/wsl/drivers/iigd_dch.inf_amd64_89d4d93fe5389cc3/libLLVM-14.so(+0x86003e) [0x7f5dc127803e]
4 0x7f5dc1277eb7 llvm::report_fatal_error(llvm::Twine const&, bool) + 151
3 0x7f5e51c5c7f3 abort + 211
2 0x7f5e51c76476 raise + 22
1 0x7f5e51cca9fc pthread_kill + 300
0 0x7f5e51c76520 /lib/x86_64-linux-gnu/libc.so.6(+0x42520) [0x7f5e51c76520]
( 0.455s) [paraview ] :0 FATL| Signal: SIGABRT
Aborted
Although it’s a different error, I started noticing this around the same time… and it used to work fine…
This is the output of conda list
# packages in environment at /home/remidm/miniconda3/envs/paraview:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
alsa-lib 1.2.10 hd590300_0 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
blosc 1.21.5 h0f2a231_0 conda-forge
brotli 1.1.0 hd590300_1 conda-forge
brotli-bin 1.1.0 hd590300_1 conda-forge
bzip2 1.0.8 hd590300_5 conda-forge
c-ares 1.26.0 hd590300_0 conda-forge
ca-certificates 2024.2.2 hbcca054_0 conda-forge
cairo 1.18.0 h3faef2a_0 conda-forge
certifi 2024.2.2 pyhd8ed1ab_0 conda-forge
cgns 4.4.0 h1704e6f_2 conda-forge
contourpy 1.2.0 py312h8572e83_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
double-conversion 3.3.0 h59595ed_0 conda-forge
expat 2.5.0 hcb278e6_1 conda-forge
fmt 10.2.1 h00ab1b0_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_1 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.49.0 py312h98912ed_0 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
gl2ps 1.4.2 h0708190_0 conda-forge
glew 2.1.0 h9c3ff4c_2 conda-forge
glib 2.78.4 hfc55251_0 conda-forge
glib-tools 2.78.4 hfc55251_0 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
gst-plugins-base 1.22.9 h8e1006c_0 conda-forge
gstreamer 1.22.9 h98fc4e7_0 conda-forge
harfbuzz 8.3.0 h3d44ed6_0 conda-forge
hdf4 4.2.15 h2a13503_7 conda-forge
hdf5 1.14.3 nompi_h4f84152_100 conda-forge
icu 73.2 h59595ed_0 conda-forge
jsoncpp 1.9.5 h4bd325d_1 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.5 py312h8572e83_1 conda-forge
krb5 1.21.2 h659d440_0 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
lcms2 2.16 hb7c19ff_0 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libabseil 20230802.1 cxx17_h59595ed_0 conda-forge
libaec 1.1.2 h59595ed_1 conda-forge
libblas 3.9.0 21_linux64_openblas conda-forge
libbrotlicommon 1.1.0 hd590300_1 conda-forge
libbrotlidec 1.1.0 hd590300_1 conda-forge
libbrotlienc 1.1.0 hd590300_1 conda-forge
libcap 2.69 h0f662aa_0 conda-forge
libcblas 3.9.0 21_linux64_openblas conda-forge
libclang 15.0.7 default_hb11cfb5_4 conda-forge
libclang13 15.0.7 default_ha2b6cf4_4 conda-forge
libcups 2.3.3 h4637d8d_4 conda-forge
libcurl 8.5.0 hca28451_0 conda-forge
libdeflate 1.19 hd590300_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 hd590300_2 conda-forge
libevent 2.1.12 hf998b51_1 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.3 h59595ed_0 conda-forge
libgcc-ng 13.2.0 h807b86a_5 conda-forge
libgcrypt 1.10.3 hd590300_0 conda-forge
libgfortran-ng 13.2.0 h69a702a_5 conda-forge
libgfortran5 13.2.0 ha4646dd_5 conda-forge
libglib 2.78.4 h783c2da_0 conda-forge
libglu 9.0.0 hac7e632_1003 conda-forge
libgomp 13.2.0 h807b86a_5 conda-forge
libgpg-error 1.47 h71f35ed_0 conda-forge
libharu 2.4.4 h267a509_0 conda-forge
libiconv 1.17 hd590300_2 conda-forge
libjpeg-turbo 3.0.0 hd590300_1 conda-forge
liblapack 3.9.0 21_linux64_openblas conda-forge
libllvm15 15.0.7 hb3ce162_4 conda-forge
libnetcdf 4.9.2 nompi_h9612171_113 conda-forge
libnghttp2 1.58.0 h47da74e_1 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.26 pthreads_h413a1c8_0 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.42 h2797004_0 conda-forge
libpq 16.2 h33b98f1_0 conda-forge
libprotobuf 4.25.1 hf27288f_2 conda-forge
libsndfile 1.2.2 hc60ed4a_1 conda-forge
libsqlite 3.45.1 h2797004_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-ng 13.2.0 h7e041cc_5 conda-forge
libsystemd0 255 h3516f8a_0 conda-forge
libtheora 1.1.1 h7f98852_1005 conda-forge
libtiff 4.6.0 ha9c0a0a_2 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.3.2 hd590300_0 conda-forge
libxcb 1.15 h0b41bf4_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libxkbcommon 1.6.0 hd429924_1 conda-forge
libxml2 2.12.5 h232c23b_0 conda-forge
libzip 1.10.1 h2629f0a_3 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
matplotlib-base 3.8.3 py312he5832f3_0 conda-forge
mpg123 1.32.4 h59595ed_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.33 hf1915f5_6 conda-forge
mysql-libs 8.0.33 hca2cd23_6 conda-forge
ncurses 6.4 h59595ed_2 conda-forge
nspr 4.35 h27087fc_0 conda-forge
nss 3.98 h1d7d5a4_0 conda-forge
numpy 1.26.4 py312heda63a1_0 conda-forge
openjpeg 2.5.0 h488ebb8_3 conda-forge
openssl 3.2.1 hd590300_0 conda-forge
packaging 23.2 pyhd8ed1ab_0 conda-forge
paraview 5.11.2 py312h6a8de92_102_qt conda-forge
pcre2 10.42 hcad00b1_0 conda-forge
pillow 10.2.0 py312hf3581a9_0 conda-forge
pip 24.0 pyhd8ed1ab_0 conda-forge
pixman 0.43.2 h59595ed_0 conda-forge
proj 9.3.1 h1d62c97_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
pugixml 1.14 h59595ed_0 conda-forge
pulseaudio-client 16.1 hb77b528_5 conda-forge
pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge
python 3.12.2 hab00c5b_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.12 4_cp312 conda-forge
qt-main 5.15.8 h5810be5_19 conda-forge
readline 8.2 h8228510_1 conda-forge
setuptools 69.1.0 pyhd8ed1ab_1 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snappy 1.1.10 h9fff704_0 conda-forge
sqlite 3.45.1 h2c6b66d_0 conda-forge
tk 8.6.13 noxft_h4845f30_101 conda-forge
tzdata 2024a h0c530f3_0 conda-forge
wheel 0.42.0 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.0 hd590300_1 conda-forge
xcb-util-image 0.4.0 h8ee46fc_1 conda-forge
xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge
xcb-util-renderutil 0.3.9 hd590300_1 conda-forge
xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge
xkeyboard-config 2.41 hd590300_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.1.1 hd590300_0 conda-forge
xorg-libsm 1.2.4 h7391055_0 conda-forge
xorg-libx11 1.8.7 h8ee46fc_0 conda-forge
xorg-libxau 1.0.11 hd590300_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h0b41bf4_2 conda-forge
xorg-libxrender 0.9.11 hd590300_0 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge
xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zlib 1.2.13 hd590300_5 conda-forge
zstd 1.5.5 hfc55251_0 conda-forge
astucky
(Adrien Stucky)
February 22, 2024, 1:42pm
9
How do I check the libc version?
run
/lib/x86_64-linux-gnu/libc.so.6
astucky
(Adrien Stucky)
February 22, 2024, 1:57pm
10
The issue comes from the Glibc 2.35 package version of apt (which was recently updated on ubuntu 22.04 LTS).
Docker image ubuntu:latest (aka ubuntu:22.04) has that Glibc uncompatible version, so while it’s not fixed the best workaround would be to use ubuntu:20.04. It uses Glibc 2.31 and is not affected by that segmentation fault.
Thanks! Do you know if this issue is also causing the SIGABRT signal error I had with conda?
The version of ubuntu was 22.04.03
astucky
(Adrien Stucky)
February 23, 2024, 9:14am
12
Ubuntu version is not important. Type in your terminal
/lib/x86_64-linux-gnu/libc.so.6
If it says version >= 2.35 then yes, your issue is the same. If not, I don’t really know what could cause it.
2 Likes
Indeed, it is version 2.35 which would explain the bug.
Thank you very much! Is there an issue opened to track the progress on this?
1 Like
mwestphal
(Mathieu Westphal (Kitware))
February 23, 2024, 1:23pm
14
2 Likes