vtk Unstructured Grid

Dario · December 24, 2024, 4:37am

Hi everyone, I’m trying to upload an unstructured grid vtk file into Paraview to visualize a Voronoi tessellation, but it crashes and the following error appears:

Loguru caught a signal: SIGSEGV
Stack trace:
78            0x407b2a /opt/ParaView-5.9.1/bin/paraview-real() [0x407b2a]
77      0x7f8e99cdc840 __libc_start_main + 240
76            0x40778a /opt/ParaView-5.9.1/bin/paraview-real() [0x40778a]
75      0x7f8e9717a120 QCoreApplication::exec() + 128
74      0x7f8e9717162a QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 298
73      0x7f8e609bae13 /opt/ParaView-5.9.1/plugins/platforms/../../lib/libQt5XcbQpa.so.5(+0x5ee13) [0x7f8e609bae13]
72      0x7f8e977fab9b QWindowSystemInterface::sendWindowSystemEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 187
71      0x7f8e9781f5f5 QGuiApplicationPrivate::processWindowSystemEvent(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 261
70      0x7f8e9781e36d QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 1837
69      0x7f8e97172dd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 280
68      0x7f8e99132260 QApplication::notify(QObject*, QEvent*) + 704
67      0x7f8e9912b18c QApplicationPrivate::notify_helper(QObject*, QEvent*) + 156
66      0x7f8e991858fb /opt/ParaView-5.9.1/bin/../lib/libQt5Widgets.so.5(+0x1b68fb) [0x7f8e991858fb]
65      0x7f8e99182d86 /opt/ParaView-5.9.1/bin/../lib/libQt5Widgets.so.5(+0x1b3d86) [0x7f8e99182d86]
64      0x7f8e991317cc QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer<QWidget>&, bool, bool) + 460
63      0x7f8e97172dd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 280
62      0x7f8e99132dc8 QApplication::notify(QObject*, QEvent*) + 3624
61      0x7f8e9912b18c QApplicationPrivate::notify_helper(QObject*, QEvent*) + 156
60      0x7f8e99168c28 QWidget::event(QEvent*) + 424
59      0x7f8e9920e945 QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 213
58      0x7f8e9920e77a /opt/ParaView-5.9.1/bin/../lib/libQt5Widgets.so.5(+0x23f77a) [0x7f8e9920e77a]
57      0x7f8e9920d45a /opt/ParaView-5.9.1/bin/../lib/libQt5Widgets.so.5(+0x23e45a) [0x7f8e9920d45a]
56      0x7f8e9920d272 QAbstractButton::clicked(bool) + 50
55      0x7f8e971a11ea QMetaObject::activate(QObject*, int, int, void**) + 1850
54      0x7f8e989ef01f pqPropertiesPanel::apply() + 687
53      0x7f8e988a43c2 pqPropertiesPanel::applied(pqProxy*) + 50
52      0x7f8e971a11ea QMetaObject::activate(QObject*, int, int, void**) + 1850
51      0x7f8e998e6c51 pqApplyBehavior::applied(pqPropertiesPanel*, pqProxy*) + 193
50      0x7f8e998e7dce pqApplyBehavior::showData(pqPipelineSource*, pqView*) + 414
49      0x7f8e8c4d53c8 vtkSMParaViewPipelineControllerWithRendering::ShowInPreferredView(vtkSMSourceProxy*, int, vtkSMViewProxy*) + 168
48      0x7f8e8c4d3164 vtkSMParaViewPipelineControllerWithRendering::UpdatePipelineBeforeDisplay(vtkSMSourceProxy*, int, vtkSMViewProxy*) + 212
47      0x7f8e96577dcc vtkSMSourceProxy::UpdatePipeline(double) + 140
46      0x7f8e964f6e58 vtkSMOutputPort::UpdatePipelineInternal(double, bool) + 184
45      0x7f8e964452e5 vtkPVSessionBase::ExecuteStream(unsigned int, vtkClientServerStream const&, bool) + 53
44      0x7f8e964462bb vtkPVSessionCore::ExecuteStream(unsigned int, vtkClientServerStream const&, bool) + 59
43      0x7f8e96446482 vtkPVSessionCore::ExecuteStreamInternal(vtkClientServerStream const&, bool) + 242
42      0x7f8e952f9ddd vtkClientServerInterpreter::ProcessStream(vtkClientServerStream const&) + 29
41      0x7f8e952f9b3e vtkClientServerInterpreter::ProcessOneMessage(vtkClientServerStream const&, int) + 1294
40      0x7f8e952f940d vtkClientServerInterpreter::ProcessCommandInvoke(vtkClientServerStream const&, int) + 1229
39      0x7f8e952f8da9 vtkClientServerInterpreter::CallCommandFunction(char const*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&) + 345
38      0x7f8e8d36bf9e vtkSIMetaReaderProxyCommand(vtkClientServerInterpreter*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&, void*) + 446
37      0x7f8e952f8da9 vtkClientServerInterpreter::CallCommandFunction(char const*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&) + 345
36      0x7f8e8d371aab vtkSISourceProxyCommand(vtkClientServerInterpreter*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&, void*) + 971
35      0x7f8e96482494 vtkSISourceProxy::UpdatePipeline(int, double, bool) + 468
34      0x7f8e9205fc1a vtkStreamingDemandDrivenPipeline::Update(int, vtkInformationVector*) + 282
33      0x7f8e9201ffa6 vtkDemandDrivenPipeline::UpdateData(int) + 134
32      0x7f8e9205e859 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 953
31      0x7f8e92020f8e vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 222
30      0x7f8e9201a6c1 vtkCompositeDataPipeline::ForwardUpstream(vtkInformation*) + 337
29      0x7f8e9205e859 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 953
28      0x7f8e92020fe6 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 310
27      0x7f8e9201b7d1 vtkCompositeDataPipeline::ExecuteData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 113
26      0x7f8e9201e967 vtkDemandDrivenPipeline::ExecuteData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 55
25      0x7f8e9202473e vtkExecutive::CallAlgorithm(vtkInformation*, int, vtkInformationVector**, vtkInformationVector*) + 62
24      0x7f8e8c83c33d vtkFileSeriesReader::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 301
23      0x7f8e8c83c0f5 vtkFileSeriesReader::RequestData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 181
22      0x7f8e79216864 vtkPDataSetReader::RequestData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 932
21      0x7f8e9205fc1a vtkStreamingDemandDrivenPipeline::Update(int, vtkInformationVector*) + 282
20      0x7f8e9201ffa6 vtkDemandDrivenPipeline::UpdateData(int) + 134
19      0x7f8e9205e859 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 953
18      0x7f8e92020fe6 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 310
17      0x7f8e9201e967 vtkDemandDrivenPipeline::ExecuteData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 55
16      0x7f8e920370a7 vtkReaderExecutive::CallAlgorithm(vtkInformation*, int, vtkInformationVector**, vtkInformationVector*) + 839
15      0x7f8e89d5f685 vtkDataReader::ReadMesh(int, int, int, int, vtkDataObject*) + 85
14      0x7f8e92039dcb vtkSimpleReader::ReadMesh(int, int, int, int, vtkDataObject*) + 91
13      0x7f8e89d721b8 vtkDataSetReader::ReadMeshSimple(std::string const&, vtkDataObject*) + 12376
12      0x7f8e9205fc1a vtkStreamingDemandDrivenPipeline::Update(int, vtkInformationVector*) + 282
11      0x7f8e9201ffa6 vtkDemandDrivenPipeline::UpdateData(int) + 134
10      0x7f8e9205e859 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 953
9       0x7f8e92020fe6 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 310
8       0x7f8e9201e967 vtkDemandDrivenPipeline::ExecuteData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) + 55
7       0x7f8e920370a7 vtkReaderExecutive::CallAlgorithm(vtkInformation*, int, vtkInformationVector**, vtkInformationVector*) + 839
6       0x7f8e89d5f685 vtkDataReader::ReadMesh(int, int, int, int, vtkDataObject*) + 85
5       0x7f8e92039dcb vtkSimpleReader::ReadMesh(int, int, int, int, vtkDataObject*) + 91
4       0x7f8e89dad9b8 vtkUnstructuredGridReader::ReadMeshSimple(std::string const&, vtkDataObject*) + 3528
3       0x7f8e91cd1bca vtkUnstructuredGrid::SetCells(int*, vtkCellArray*) + 506
2       0x7f8e91cd17d6 vtkUnstructuredGrid::SetCells(vtkUnsignedCharArray*, vtkCellArray*) + 1126
1       0x7f8e91ccdfd0 vtkUnstructuredGrid::DecomposeAPolyhedronCell(long long, long long const*, long long&, vtkCellArray*, vtkIdTypeArray*) + 176
0       0x7f8e99cf14c0 /lib/x86_64-linux-gnu/libc.so.6(+0x354c0) [0x7f8e99cf14c0]
(   8.902s) [paraview        ]                       :0     FATL| Signal: SIGSEGV
error: exception occurred: Segmentation fault

Can anyone help me out with this? I already achieved the correct visualization of the tessellation by using a POLYDATA vtk file, but I need to attach field data to the Voronoi cells, so I need an unstructured grid file for this. I checked the format and data consistency, and everything appears fine to me. You can find the file in the following link:

nicolas.vuaille · December 24, 2024, 8:45am

Hi @Dario ,

Thanks for reporting but it seems that you shared a private link.

Not sure about that point. UnstructuredGrid only adds 3D cells support in comparison to PolyData. Can you detail what is not possible with polydata ?

Dario · December 26, 2024, 5:00am

Please try the following link, unfortunately, the file is too big to share it directly.
https://www.dropbox.com/scl/fi/g3hl2qfjxvxbjd1871w6m/voronoi_tessellation.zip?rlkey=etvovffijrss0jk69jj2l6dbl&st=dypcdses&dl=0

I need UnstructeredGrid because I have point data defined for each Voronoi cell that I need to visualize in Paraview, so if I used Polydata there would be a mismatch between the number of point data and polygons of the Voronoi cells.

mwestphal · December 30, 2024, 12:50pm

Im unable to reproduce the segfault using ParaView 5.13.1 linux binary release.

Dario · January 14, 2025, 11:51pm

Hi Mathieu, thanks for the answer. What does that mean practically? Is it the same error as mine?

mwestphal · January 15, 2025, 7:23am

It means that you should try with ParaView 5.13.1 and see if you still reproduce the issue.